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microarray suite version 5 mas5 algorithms  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray suite version 5 mas5 algorithms
    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the <t>MAS5</t> algorithm.
    Microarray Suite Version 5 Mas5 Algorithms, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+suite+5+(mas5)+algorithm/pmc02721853-161-12-11
    Average 86 stars, based on 1 article reviews
    microarray suite version 5 mas5 algorithms - by Bioz Stars, 2026-09
    86/100 stars

    Images

    1) Product Images from "Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues"

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-10-324

    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.
    Figure Legend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Techniques Used: Expressing, Microarray

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    Article Title: DS-7250, a Diacylglycerol Acyltransferase 1 Inhibitor, Enhances Hepatic Steatosis in Zucker Fatty Rats via Upregulation of Fatty Acid Synthesis.
    Article Snippet: Every biotinlabeled cDNA target sample (approximately 10 μg) was individually hybridized to a GeneChip Rat Genome 230 2.0 Array (Affymetrix Inc.) at 45 C for 16 hr followed by washing and staining by streptavidin–phycoerythrin using Fluidics Station 450 (Affymetrix Inc.). .. The scanned image was analyzed with an Affymetrix MicroArray Suite 5 (MAS5) algorithm using GeneChip Operating Software (version 1.4; Affymetrix Inc.). ..

    Article Title: Identification of Sestrin3 Involved in the In vitro Resistance of Colorectal Cancer Cells to Irinotecan
    Article Snippet: After hybridization, chips were stained and washed in the Genechip Fluidics Station 450 (Affymetrix), and scanned using a Genechip Array scanner 3000 7G (Affymetrix). .. For statistical analysis, a detection call (Present/Absent) was generated by the Affymetrix microarray suite 5(MAS5) algorithm. ..


    Article Title: Integrative lipidomic and transcriptomic analysis of X-linked adrenoleukodystrophy reveals distinct lipidome signatures between adrenomyeloneuropathy and childhood cerebral adrenoleukodystrophy.
    Article Snippet: Precise pathophysiology with respect to the phenotypic variations and severity of X-ALD, specifically between adrenomyeloneuropathy (AMN) and childhood cerebral adrenoleukodystrophy (CCALD), has not been fully discovered.. Herein, a systematic analysis using multi-layered lipidomics and transcriptomics was conducted to elucidate distinctive metabolic biosignatures among healthy control, AMN, and CCALD.. Significant alterations regarding the accumulation of very long chain fatty acids were found in various lipid species such as phospholipids, glycerolipids, and sphingolipids.

    Software:

    Article Title: DS-7250, a Diacylglycerol Acyltransferase 1 Inhibitor, Enhances Hepatic Steatosis in Zucker Fatty Rats via Upregulation of Fatty Acid Synthesis.
    Article Snippet: Every biotinlabeled cDNA target sample (approximately 10 μg) was individually hybridized to a GeneChip Rat Genome 230 2.0 Array (Affymetrix Inc.) at 45 C for 16 hr followed by washing and staining by streptavidin–phycoerythrin using Fluidics Station 450 (Affymetrix Inc.). .. The scanned image was analyzed with an Affymetrix MicroArray Suite 5 (MAS5) algorithm using GeneChip Operating Software (version 1.4; Affymetrix Inc.). ..

    Article Title: Integrative lipidomic and transcriptomic analysis of X-linked adrenoleukodystrophy reveals distinct lipidome signatures between adrenomyeloneuropathy and childhood cerebral adrenoleukodystrophy.
    Article Snippet: Precise pathophysiology with respect to the phenotypic variations and severity of X-ALD, specifically between adrenomyeloneuropathy (AMN) and childhood cerebral adrenoleukodystrophy (CCALD), has not been fully discovered.. Herein, a systematic analysis using multi-layered lipidomics and transcriptomics was conducted to elucidate distinctive metabolic biosignatures among healthy control, AMN, and CCALD.. Significant alterations regarding the accumulation of very long chain fatty acids were found in various lipid species such as phospholipids, glycerolipids, and sphingolipids.

    Generated:

    Article Title: Identification of Sestrin3 Involved in the In vitro Resistance of Colorectal Cancer Cells to Irinotecan
    Article Snippet: After hybridization, chips were stained and washed in the Genechip Fluidics Station 450 (Affymetrix), and scanned using a Genechip Array scanner 3000 7G (Affymetrix). .. For statistical analysis, a detection call (Present/Absent) was generated by the Affymetrix microarray suite 5(MAS5) algorithm. ..

    Expressing:

    Article Title: Integrative lipidomic and transcriptomic analysis of X-linked adrenoleukodystrophy reveals distinct lipidome signatures between adrenomyeloneuropathy and childhood cerebral adrenoleukodystrophy.
    Article Snippet: Precise pathophysiology with respect to the phenotypic variations and severity of X-ALD, specifically between adrenomyeloneuropathy (AMN) and childhood cerebral adrenoleukodystrophy (CCALD), has not been fully discovered.. Herein, a systematic analysis using multi-layered lipidomics and transcriptomics was conducted to elucidate distinctive metabolic biosignatures among healthy control, AMN, and CCALD.. Significant alterations regarding the accumulation of very long chain fatty acids were found in various lipid species such as phospholipids, glycerolipids, and sphingolipids.



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    Image Search Results


    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Journal: BMC Genomics

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    doi: 10.1186/1471-2164-10-324

    Figure Lengend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Article Snippet: Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call.

    Techniques: Expressing, Microarray